C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAE1 RNA export 1 homolog (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132212 Rae1-002 ENSMUSG00000027509 10090 + 2:173000124-173009445 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLiverOvaryPlacentaTestisENSMUST00000132212
Transcript ID Adipose Brain Colon Heart Liver Ovary Placenta Testis
ENSMUST00000132212 8.661±0.00 13.966±0.00 12.781±0.76 5.678±0.00 6.359±0.45 28.121±13.42 19.889±5.65 15.169±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_0002XR CIL_0002XR_0002 CGP 2:172977700-173015739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0071407 IDA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371242 RAE1-002 protein_coding Homo_sapiens 0 737
ENST00000395840 RAE1-003 protein_coding Homo_sapiens 0 726
ENST00000395841 RAE1-001 protein_coding Homo_sapiens 0 726
ENST00000492498 RAE1-008 nonsense_mediated_decay Homo_sapiens 0 726
ENST00000527947 RAE1-010 protein_coding Homo_sapiens 0 726

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