C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylglycerophosphate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132676 Pgs1-001 ENSMUSG00000017715 10090 + 11:117986292-118024011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000132676
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000132676 9.832±2.89 28.708±21.35 11.106±2.53 13.324±6.19 24.439±3.60 4.208±0.14 8.434±2.39 4.278±1.24 36.692±14.02 2.352±0.47 29.984±10.36 2.253±0.01 18.434±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_0003UD CIL_0003UD_0003 CGP 11:117966079-118024011
CIL_00062Y CIL_00062Y_0002 CGP 11:117986292-118129219

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005524 IEA ATP binding
GO:0005739 ISS mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0006655 ISS phosphatidylglycerol biosynthetic process
GO:0008150 ND biological_process
GO:0008444 ISS CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008654 ISS phospholipid biosynthetic process
GO:0032049 ISS cardiolipin biosynthetic process
GO:0046339 ISS diacylglycerol metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262764 PGS1-001 protein_coding Homo_sapiens 0 2174
ENST00000585521 PGS1-009 processed_transcript Homo_sapiens 0 606
ENST00000586019 PGS1-010 protein_coding Homo_sapiens 0 333
ENST00000586325 PGS1-015 processed_transcript Homo_sapiens 0 300
ENST00000586510 PGS1-016 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000587356 PGS1-014 protein_coding Homo_sapiens 0 619
ENST00000588169 PGS1-005 nonsense_mediated_decay Homo_sapiens 0 1531
ENST00000588281 PGS1-007 processed_transcript Homo_sapiens 0 1423
ENST00000589425 PGS1-002 nonsense_mediated_decay Homo_sapiens 0 1236
ENST00000589426 PGS1-004 nonsense_mediated_decay Homo_sapiens 0 1147
ENST00000589689 PGS1-003 protein_coding Homo_sapiens 0 926
ENST00000591996 PGS1-008 retained_intron Homo_sapiens 0 998
ENST00000592043 PGS1-006 protein_coding Homo_sapiens 0 1170

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