C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protease (prosome, macropain) 26S subunit, ATPase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133131 Psmc5-002 ENSMUSG00000020708 10090 + 11:106256154-106263120 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryENSMUST00000133131
Transcript ID Breast Ovary
ENSMUST00000133131 3.488±0.00 5.390±2.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006Q9 CIL_0006Q9_0002 CGP 11:106249142-106263120
CIL_0006QA CIL_0006QA_0002 CGP 11:106256154-106272972

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005675 ISA holo TFIIH complex
GO:0005737 IEA cytoplasm
GO:0005838 IDA proteasome regulatory particle
GO:0006508 IEA proteolysis
GO:0008134 ISA transcription factor binding
GO:0008233 IEA peptidase activity
GO:0030163 IEA protein catabolic process
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310144 PSMC5-001 protein_coding Homo_sapiens 0 1282
ENST00000375812 PSMC5-201 protein_coding Homo_sapiens 0 1221
ENST00000496846 DKFZP586I1420-001 processed_pseudogene Homo_sapiens 5e-27 126
ENST00000578570 PSMC5-005 retained_intron Homo_sapiens 0 1221
ENST00000579031 PSMC5-014 retained_intron Homo_sapiens 0 917
ENST00000579147 PSMC5-003 retained_intron Homo_sapiens 0 1112
ENST00000579708 PSMC5-008 protein_coding Homo_sapiens 0 492
ENST00000580063 PSMC5-015 retained_intron Homo_sapiens 0 595
ENST00000580265 PSMC5-009 retained_intron Homo_sapiens 1e-24 117
ENST00000580864 PSMC5-004 protein_coding Homo_sapiens 0 1221
ENST00000581764 PSMC5-002 retained_intron Homo_sapiens 0 459
ENST00000581842 PSMC5-018 protein_coding Homo_sapiens 0 808
ENST00000581882 PSMC5-006 protein_coding Homo_sapiens 0 1223
ENST00000582130 PSMC5-011 protein_coding Homo_sapiens 0 673
ENST00000583283 PSMC5-012 retained_intron Homo_sapiens 9.99995e-41 171
ENST00000584320 PSMC5-020 protein_coding Homo_sapiens 0 935
ENST00000584536 PSMC5-013 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000584657 PSMC5-017 retained_intron Homo_sapiens 0 243
ENST00000584880 PSMC5-016 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000585123 PSMC5-019 protein_coding Homo_sapiens 0 983
ENST00000585242 PSMC5-007 nonsense_mediated_decay Homo_sapiens 0 1037
ENST00000589763 RP11-635N19.2-001 processed_pseudogene Homo_sapiens 0 656

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