C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: chemokine (C-X-C motif) ligand 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134244 Cxcl12-004 ENSMUSG00000061353 10090 + 6:117168577-117176127 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENSMUST00000134244
Transcript ID Ovary Testis
ENSMUST00000134244 1.249±0.00 0.147±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055S CIL_00055S_0002 CGP 6:116692630-117181367
CIL_0007QA CIL_0007QA_0002 VISTA 6:116979209-117580409

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343575 CXCL12-001 protein_coding Homo_sapiens 0 521
ENST00000374426 CXCL12-003 protein_coding Homo_sapiens 0 372
ENST00000374429 CXCL12-002 protein_coding Homo_sapiens 0 372
ENST00000395794 CXCL12-004 protein_coding Homo_sapiens 0 370
ENST00000488591 CXCL12-007 retained_intron Homo_sapiens 0 243
ENST00000496375 CXCL12-006 processed_transcript Homo_sapiens 0 339

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