C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0007QA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm247 VISTA 9606 10:43961287-44562544
GeneTranscriptPositionBiotype
ENSG00000107562 (CXCL12)
chemokine (C-X-C motif) ligand 12
ENST00000343575 (CXCL12-001) 44377133-44385092 protein_coding
ENST00000374426 (CXCL12-003) 44375867-44385043 protein_coding
ENST00000374429 (CXCL12-002) 44370165-44385092 protein_coding
ENST00000395793 (CXCL12-005) 44372622-44385092 protein_coding
ENST00000395794 (CXCL12-004) 44377164-44385049 protein_coding
ENST00000395795 (CXCL12-201) 44372888-44385097 protein_coding
ENST00000488591 (CXCL12-007) 44380411-44385070 retained_intron
ENST00000496375 (CXCL12-006) 44378557-44386493 processed_transcript
ENSG00000214089 (RP11-256K7.1)
ENST00000392269 (RP11-256K7.1-001) 44414649-44415153 processed_pseudogene
ENSG00000229116 (RP11-20J15.3)
ENST00000452578 (RP11-20J15.3-001) 44292084-44293709 lincRNA
ENST00000624407 (RP11-20J15.3-002) 44282926-44292734 lincRNA
ENSG00000237590 (RP11-20J15.2)
ENST00000437014 (RP11-20J15.2-001) 44259602-44261813 lincRNA
CIL_0007QA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm247 VISTA 10090 6:116979209-117580409
GeneTranscriptPositionBiotype
ENSMUSG00000054488 (Gm9946)
predicted gene 9946
ENSMUST00000008011 (Gm9946-002) 117559697-117568193 lincRNA
ENSMUST00000162741 (Gm9946-001) 117559697-117572329 lincRNA
ENSMUST00000165995 (Gm9946-201) 117567672-117568055 lincRNA
ENSMUSG00000061353 (Cxcl12)
chemokine (C-X-C motif) ligand 12
ENSMUST00000073043 (Cxcl12-003) 117168577-117181367 protein_coding
ENSMUST00000112866 (Cxcl12-001) 117168535-117175069 protein_coding
ENSMUST00000112871 (Cxcl12-002) 117168574-117181366 protein_coding
ENSMUST00000134244 (Cxcl12-004) 117168577-117176127 retained_intron
ENSMUST00000185648 (Cxcl12-201) 117168535-117175069 protein_coding
ENSMUSG00000090549 (Rpl28-ps4)
ribosomal protein L28, pseudogene 4
ENSMUST00000170447 (Rpl28-ps4-201) 117213656-117214048 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007QA_0001ENSG00000107562ENST00000343575ENST00000374426ENST00000374429ENST00000395793ENST00000395794ENST00000395795ENST00000488591ENST00000496375ENSG00000214089ENST00000392269ENSG00000229116ENST00000452578ENST00000624407ENSG00000237590ENST00000437014CIL_0007QA_0002ENSMUSG00000054488ENSMUST00000008011ENSMUST00000162741ENSMUST00000165995ENSMUSG00000061353ENSMUST00000073043ENSMUST00000112866ENSMUST00000112871ENSMUST00000134244ENSMUST00000185648ENSMUSG00000090549ENSMUST00000170447
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007QA_0001ENSG00000107562ENST00000343575ENST00000374426ENST00000374429ENSG00000214089ENST00000392269ENSG00000229116ENST00000452578ENSG00000237590ENST00000437014CIL_0007QA_0002ENSMUSG00000054488ENSMUST00000008011ENSMUST00000162741ENSMUST00000165995ENSMUSG00000061353ENSMUST00000073043ENSMUST00000112871ENSMUST00000134244ENSMUST00000185648ENSMUSG00000090549ENSMUST00000170447
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107562 ENST00000343575 160.803±0.00 225.838±0.00 13.460±0.00 1.914±0.29 40.739±29.13 44.649±36.60 17.322±12.77 27.963±10.48 23.480±3.61 17.804±10.19 9.059±4.87 38.762±33.99 3.201±0.73 20.885±15.45
ENST00000374426 N/A N/A N/A N/A N/A N/A 4.257±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000374429 N/A N/A N/A 0.308±0.00 3.351±2.24 4.610±3.46 3.856±0.00 4.777±0.82 3.306±0.00 2.467±0.00 1.282±0.00 5.761±3.94 1.035±0.37 2.709±1.78
ENST00000395793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214089 ENST00000392269 0.101±0.00 0.231±0.00 N/A 0.053±0.00 0.101±0.00 0.187±0.00 N/A 0.488±0.00 0.046±0.00 0.141±0.00 0.046±0.00 0.131±0.00 N/A 0.070±0.00
ENSG00000229116 ENST00000452578 0.576±0.00 0.644±0.00 N/A 0.245±0.00 0.530±0.00 0.034±0.00 0.543±0.00 N/A 0.312±0.00 0.438±0.03 0.646±0.00 0.181±0.09 N/A 0.474±0.21
ENST00000624407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237590 ENST00000437014 N/A 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000054488 ENSMUST00000008011 0.044±0.00 N/A 0.008±0.00 N/A N/A N/A 0.033±0.00 0.110±0.06 N/A 0.091±0.00 0.023±0.00 N/A N/A 0.110±0.00
ENSMUST00000162741 0.034±0.01 N/A 0.005±0.00 0.076±0.00 N/A 0.058±0.00 0.042±0.00 0.121±0.05 0.146±0.10 0.031±0.00 N/A N/A 0.020±0.00 0.058±0.03
ENSMUST00000165995 N/A N/A N/A 0.219±0.00 N/A N/A N/A 0.173±0.06 0.256±0.04 N/A N/A N/A N/A 0.207±0.00
ENSMUSG00000061353 ENSMUST00000073043 34.469±1.78 6.885±1.60 9.691±0.68 3.024±0.03 26.383±5.17 8.811±0.96 30.551±3.71 9.170±0.97 12.013±7.01 71.803±6.61 8.922±2.12 17.828±10.03 1.414±1.41 1.293±0.67
ENSMUST00000112866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112871 N/A N/A N/A 4.754±2.91 11.602±0.00 N/A N/A 43.879±4.07 43.232±27.03 N/A N/A 13.435±8.52 3.956±2.79 1.245±0.32
ENSMUST00000134244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.249±0.00 N/A 0.147±0.00
ENSMUST00000185648 129.193±64.77 128.302±7.98 115.803±1.88 11.738±7.40 180.470±93.78 134.305±13.75 21.975±1.49 135.149±29.63 93.598±67.98 67.352±17.34 9.221±2.09 145.319±105.91 7.380±4.99 4.556±2.82
ENSMUSG00000090549 ENSMUST00000170447 N/A N/A N/A N/A 0.180±0.00 N/A N/A N/A 0.229±0.00 N/A 0.139±0.00 N/A N/A 0.149±0.01

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