C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: kinetochore-localized astrin/SPAG5 binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134661 Knstrn-001 ENSMUSG00000027331 10090 + 2:118814003-118837696 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000134661
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000134661 0.777±0.63 0.505±0.18 0.454±0.01 1.930±0.20 0.520±0.06 2.546±0.34 0.130±0.00 0.178±0.07 3.104±3.25 0.586±0.08 0.031±0.01 2.301±0.81 2.014±1.08 4.586±3.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W0 CIL_0008W0_0002 VISTA 2:118232227-118834856
CIL_00070L CIL_00070L_0002 CGP 2:118779719-118853957
CIL_00070I CIL_00070I_0002 CGP 2:118814003-118882909

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000070 ISS mitotic sister chromatid segregation
GO:0000776 ISS kinetochore
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007051 ISS spindle organization
GO:0007059 ISS chromosome segregation
GO:0015630 IEA microtubule cytoskeleton
GO:0035371 ISS microtubule plus-end
GO:0051988 ISS regulation of attachment of spindle microtubules to kinetochore
GO:0072686 ISS mitotic spindle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310128 KCNE3-001 protein_coding Homo_sapiens 0.00006 55
ENST00000343933 CORO2A-001 protein_coding Homo_sapiens 0.00003 57
ENST00000369093 TIAL1-005 protein_coding Homo_sapiens 0.0003 53
ENST00000375077 CORO2A-002 protein_coding Homo_sapiens 0.00003 57
ENST00000440285 NIM1K-005 processed_transcript Homo_sapiens 0.000009 55
ENST00000459624 ENPP1-002 retained_intron Homo_sapiens 0.00003 55
ENST00000506714 HERC6-004 retained_intron Homo_sapiens 0.00004 55
ENST00000560710 MORF4L1-019 retained_intron Homo_sapiens 0.00006 53
ENST00000622427 ANK3-015 nonsense_mediated_decay Homo_sapiens 0.00009 55

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