C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coronin, actin binding protein, 2A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375077 CORO2A-002 ENSG00000106789 9606 - 9:98120975-98192640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375077
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375077 0.841±0.00 1.772±0.00 0.132±0.00 0.727±0.04 0.580±0.39 1.975±0.83 0.057±0.04 0.591±0.21 0.485±0.04 1.883±0.48 0.219±0.00 4.019±3.78 1.354±0.02 4.998±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0001 VISTA 9:97562581-98164397
CIL_000853 CIL_000853_0001 VISTA 9:97573936-98178227
CIL_0009AR CIL_0009AR_0001 VISTA 9:97573936-98175680
CIL_00029O CIL_00029O_0001 CGP 9:98069275-98192640
CIL_00029Y CIL_00029Y_0001 CGP 9:98120975-98255721

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0015629 IBA actin cytoskeleton
GO:0017053 IDA transcriptional repressor complex
GO:0030036 IBA actin cytoskeleton organization
GO:0035556 TAS intracellular signal transduction
GO:0051015 IBA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107756 Coro2a-001 protein_coding Mus_musculus 0 1738
ENSMUST00000030021 Coro2a-201 protein_coding Mus_musculus 0 1659
ENSMUST00000107757 Coro2a-002 protein_coding Mus_musculus 0 1659
ENSMUST00000139179 Coro2a-003 retained_intron Mus_musculus 0 1175
ENSMUST00000135062 Coro2a-006 processed_transcript Mus_musculus 0 331
ENSMUST00000129121 Coro2a-004 retained_intron Mus_musculus 0 265
ENSMUST00000134661 Knstrn-001 protein_coding Mus_musculus 0.00003 57
ENSMUST00000021864 Ssr1-201 protein_coding Mus_musculus 0.00003 57

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