C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134865 Pde6b-002 ENSMUSG00000029491 10090 + 5:108388426-108431667 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000134865
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000134865 0.028±0.02 0.068±0.03 0.003±0.00 0.005±0.00 0.038±0.02 0.046±0.03 0.009±0.00 0.027±0.01 0.016±0.01 0.028±0.02 0.013±0.00 0.071±0.04 0.012±0.01 0.016±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070Z CIL_00070Z_0003 CGP 5:108388391-108434448

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000000392 pde6a-001 protein_coding Danio_rerio 4.99997e-41 174
ENST00000255622 PDE6B-001 protein_coding Homo_sapiens 0 1437
ENST00000429163 PDE6B-003 protein_coding Homo_sapiens 0 761
ENST00000465426 PDE6B-007 protein_coding Homo_sapiens 0 303
ENST00000467152 PDE6B-004 retained_intron Homo_sapiens 0 259
ENST00000474251 PDE6B-005 retained_intron Homo_sapiens 0 259
ENST00000476034 PDE6B-009 retained_intron Homo_sapiens 0 259
ENST00000487902 PDE6B-006 protein_coding Homo_sapiens 0 418
ENST00000488061 PDE6B-008 protein_coding Homo_sapiens 5.99756e-43 178
ENST00000496514 PDE6B-002 protein_coding Homo_sapiens 0 1437

Loading