C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prostaglandin reductase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135001 Ptgr2-002 ENSMUSG00000072946 10090 + 12:84285400-84314102 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000135001
Transcript ID Adrenal Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000135001 9.874±0.23 5.696±1.47 4.241±0.16 16.246±2.28 9.710±2.05 5.632±1.01 3.384±1.44 5.202±0.47 4.161±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089E CIL_00089E_0002 VISTA 12:83875691-84476743
CIL_0003PQ CIL_0003PQ_0002 CGP 12:84149176-84315832
CIL_0001TJ CIL_0001TJ_0002 CGP 12:84285232-84343830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0008270 IEA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267568 PTGR2-003 protein_coding Homo_sapiens 0 1081
ENST00000553813 PTGR2-008 protein_coding Homo_sapiens 0 747
ENST00000555228 PTGR2-004 protein_coding Homo_sapiens 0 1064
ENST00000555661 PTGR2-001 protein_coding Homo_sapiens 0 1068
ENST00000556219 PTGR2-005 retained_intron Homo_sapiens 0 575
ENST00000556551 RP5-1021I20.4-001 nonsense_mediated_decay Homo_sapiens 0 608

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