C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation elongation factor 1 beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135877 Eef1b2-004 ENSMUSG00000025967 10090 + 1:63177145-63179568 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungMuscleOvaryPlacentaENSMUST00000135877
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta
ENSMUST00000135877 137.157±47.96 355.411±8.39 162.977±0.00 122.583±9.92 115.782±0.00 327.074±102.10 71.247±10.70 120.582±0.00 251.426±88.32 311.251±51.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039O CIL_00039O_0002 CGP 1:62958418-63176833
CIL_0001R4 CIL_0001R4_0002 CGP 1:63143596-63180486
CIL_0001R5 CIL_0001R5_0002 CGP 1:63176825-63214543

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 ISS translation elongation factor activity
GO:0005515 IPI protein binding
GO:0005853 ISS eukaryotic translation elongation factor 1 complex
GO:0006414 ISS translational elongation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236957 EEF1B2-001 protein_coding Homo_sapiens 0 665
ENST00000392221 EEF1B2-201 protein_coding Homo_sapiens 0 665
ENST00000392222 EEF1B2-003 protein_coding Homo_sapiens 0 665
ENST00000415904 EEF1B2-005 nonsense_mediated_decay Homo_sapiens 8e-37 158
ENST00000429769 EEF1B2-007 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000435123 EEF1B2-009 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000445505 EEF1B2-004 protein_coding Homo_sapiens 0 355
ENST00000445713 AC093106.7-001 processed_pseudogene Homo_sapiens 0 656
ENST00000447718 EEF1B2P3-001 processed_pseudogene Homo_sapiens 0 654
ENST00000455150 EEF1B2-010 nonsense_mediated_decay Homo_sapiens 0 743
ENST00000460760 EEF1B2-008 retained_intron Homo_sapiens 1e-36 158
ENST00000479587 EEF1B2-006 retained_intron Homo_sapiens 9e-37 158
ENST00000482103 EEF1B2-002 retained_intron Homo_sapiens 0 285
ENST00000519625 EEF1B2P2-001 processed_pseudogene Homo_sapiens 0 592

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