C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chimerin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135904 Chn1-005 ENSMUSG00000056486 10090 - 2:73679622-73768853 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000135904
Transcript ID Muscle
ENSMUST00000135904 0.588±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HC CIL_0001HC_0002 CGP 2:73563215-73775346
CIL_0001HB CIL_0001HB_0002 CGP 2:73610660-73892639

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000409156 CHN1-003 protein_coding Homo_sapiens 0 791
ENST00000409900 CHN1-001 protein_coding Homo_sapiens 0 791
ENST00000425395 CHN1-008 nonsense_mediated_decay Homo_sapiens 0.00000000001 75
ENST00000451799 CHN1-005 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000469597 CHN1-006 processed_transcript Homo_sapiens 0 374
ENST00000488080 CHN1-004 processed_transcript Homo_sapiens 0 337
ENST00000490654 CHN1-007 retained_intron Homo_sapiens 0 610
ENST00000514910 RP11-451F20.1-001 processed_pseudogene Homo_sapiens 0 486

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