C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chimerin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056486 Chn1 10090 - 2:73610660-73775346 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070579 Chn1-003 73612888-73625740 protein_coding
  ENSMUST00000102677 Chn1-002 73610745-73660406 protein_coding
  ENSMUST00000112024 Chn1-001 73610660-73775346 protein_coding
  ENSMUST00000124450 Chn1-006 73613084-73716409 nonsense_mediated_decay
  ENSMUST00000135904 Chn1-005 73679622-73768853 protein_coding
  ENSMUST00000136953 Chn1-008 73624160-73655058 protein_coding
  ENSMUST00000139252 Chn1-004 73624878-73775326 nonsense_mediated_decay
  ENSMUST00000154258 Chn1-007 73624118-73660376 protein_coding
  ENSMUST00000166199 Chn1-201 73610660-73775346 protein_coding
  ENSMUST00000180045 Chn1-202 73610660-73775346 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartLiverMuscleOvaryPlacentaTestisENSMUST00000070579ENSMUST00000102677ENSMUST00000124450ENSMUST00000135904ENSMUST00000139252ENSMUST00000154258ENSMUST00000180045
Transcript ID Adipose Bladder Brain Colon Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000070579 N/A N/A 491.036±0.00 N/A N/A 0.351±0.12 0.671±0.07 4.218±1.77 5.457±0.01 38.353±9.06
ENSMUST00000102677 N/A N/A 38.625±0.00 3.016±1.21 N/A 0.028±0.00 0.080±0.00 0.993±0.00 N/A N/A
ENSMUST00000124450 N/A N/A N/A N/A N/A N/A N/A 3.753±0.00 N/A N/A
ENSMUST00000135904 N/A N/A N/A N/A N/A N/A 0.588±0.00 N/A N/A N/A
ENSMUST00000139252 N/A N/A N/A 1.243±0.28 N/A N/A N/A 1.103±0.42 3.106±0.00 N/A
ENSMUST00000154258 N/A N/A 172.127±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000180045 1.303±0.00 1.819±0.00 32.377±4.79 N/A 1.849±0.60 0.098±0.05 0.215±0.08 0.828±0.27 0.310±0.05 6.791±5.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HC CIL_0001HC_0002 CGP 2:73563215-73775346
CIL_0001HB CIL_0001HB_0002 CGP 2:73610660-73892639

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0008045 IMP motor neuron axon guidance
GO:0032314 IDA regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0046872 IEA metal ion binding
GO:0046875 IPI ephrin receptor binding
GO:0048013 IMP ephrin receptor signaling pathway
GO:0050770 IDA regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087701 chimerin 1 protein_coding Danio_rerio
ENSG00000128656 CHN1 chimerin 1 protein_coding Homo_sapiens

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