C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chimerin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409900 CHN1-001 ENSG00000128656 9606 - 2:174799363-175005226 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000409900
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000409900 3.894±0.00 0.921±0.20 1.289±0.00 1.413±0.00 0.210±0.00 0.775±0.00 1.265±0.00 0.799±0.35 1.874±0.57 6.201±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HC CIL_0001HC_0001 CGP 2:174747592-175005369
CIL_0001HB CIL_0001HB_0001 CGP 2:174799363-175168382

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005096 IEA GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0008045 ISS motor neuron axon guidance
GO:0009967 TAS positive regulation of signal transduction
GO:0032314 IEA regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0046872 IEA metal ion binding
GO:0046875 IEA ephrin receptor binding
GO:0048013 ISS ephrin receptor signaling pathway
GO:0050770 ISS regulation of axonogenesis
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180045 Chn1-202 protein_coding Mus_musculus 0 2433
ENSMUST00000112024 Chn1-001 protein_coding Mus_musculus 0 2433
ENSMUST00000102677 Chn1-002 protein_coding Mus_musculus 0 1609
ENSMUST00000166199 Chn1-201 protein_coding Mus_musculus 0 1116
ENSMUST00000070579 Chn1-003 protein_coding Mus_musculus 0 1005
ENSMUST00000135904 Chn1-005 protein_coding Mus_musculus 0 791
ENSMUST00000154258 Chn1-007 protein_coding Mus_musculus 0 610
ENSMUST00000139252 Chn1-004 nonsense_mediated_decay Mus_musculus 0 496
ENSMUST00000124450 Chn1-006 nonsense_mediated_decay Mus_musculus 0 462
ENSMUST00000136953 Chn1-008 protein_coding Mus_musculus 0 422

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