C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ERGIC and golgi 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136008 Ergic2-001 ENSMUSG00000030304 10090 - 6:148179079-148212374 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000136008
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000136008 4.310±1.40 7.443±0.22 7.153±2.90 2.637±0.97 1.881±0.61 2.747±0.20 3.734±0.85 5.714±2.58 2.025±0.61 3.208±0.46 4.229±2.47 9.769±2.97 3.840±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056N CIL_00056N_0002 CGP 6:147475871-148182758
CIL_0006HR CIL_0006HR_0002 CGP 6:148047259-148212374

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005730 IEA nucleolus
GO:0005783 IEA endoplasmic reticulum
GO:0005793 ISS endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0006888 ISS ER to Golgi vesicle-mediated transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360150 ERGIC2-001 protein_coding Homo_sapiens 0 1796
ENST00000546509 ERGIC2-006 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000546839 ERGIC2-002 protein_coding Homo_sapiens 0 928
ENST00000548098 ERGIC2-008 retained_intron Homo_sapiens 0 303
ENST00000548441 ERGIC2-007 protein_coding Homo_sapiens 0.000000000006 75
ENST00000548909 ERGIC2-009 protein_coding Homo_sapiens 0 603
ENST00000549182 ERGIC2-010 nonsense_mediated_decay Homo_sapiens 0 351
ENST00000550353 ERGIC2-011 protein_coding Homo_sapiens 0 529
ENST00000551467 ERGIC2-005 protein_coding Homo_sapiens 0 793
ENST00000552132 ERGIC2-003 protein_coding Homo_sapiens 0 723
ENST00000552155 ERGIC2-004 protein_coding Homo_sapiens 0 734
ENST00000611644 ERGIC2-201 protein_coding Homo_sapiens 0 1733

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