C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leprecan 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136278 Lepre1-004 ENSMUSG00000028641 10090 + 4:119232954-119248369 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverOvaryENSMUST00000136278
Transcript ID Adrenal Brain Colon Liver Ovary
ENSMUST00000136278 4.494±0.00 0.956±0.28 0.722±0.00 1.606±0.00 6.503±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N2 CIL_0008N2_0002 VISTA 4:118719151-119320076
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 ISO endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0016049 IDA cell growth
GO:0019511 ISO peptidyl-proline hydroxylation
GO:0019797 ISO procollagen-proline 3-dioxygenase activity
GO:0030199 IMP collagen fibril organization
GO:0030278 IMP regulation of ossification
GO:0032963 ISO collagen metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236040 LEPRE1-002 protein_coding Homo_sapiens 0 1142
ENST00000296388 LEPRE1-001 protein_coding Homo_sapiens 0 1312
ENST00000372526 LEPRE1-012 protein_coding Homo_sapiens 0 355
ENST00000397054 LEPRE1-201 protein_coding Homo_sapiens 0 1240
ENST00000431412 LEPRE1-008 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000447502 LEPRE1-011 protein_coding Homo_sapiens 0 444
ENST00000460031 LEPRE1-009 retained_intron Homo_sapiens 0 1487
ENST00000462474 LEPRE1-007 processed_transcript Homo_sapiens 0 433
ENST00000463465 LEPRE1-010 retained_intron Homo_sapiens 0 575
ENST00000472802 LEPRE1-006 retained_intron Homo_sapiens 0 327
ENST00000481465 LEPRE1-013 retained_intron Homo_sapiens 0 564
ENST00000492956 LEPRE1-003 retained_intron Homo_sapiens 0 555
ENST00000495874 LEPRE1-004 retained_intron Homo_sapiens 0 2678

Loading