C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136502 Smc4-003 ENSMUSG00000034349 10090 + 3:69004970-69018108 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryENSMUST00000136502
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary
ENSMUST00000136502 1.294±0.00 8.604±4.18 7.595±0.49 3.752±0.07 0.568±0.00 1.121±0.46 0.741±0.30 2.322±0.23 7.543±3.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0003 CGP 3:68892499-69034623
CIL_0004JQ CIL_0004JQ_0003 CGP 3:69004738-69044755

Gene Ontology

GO IDEvidence TypeGO Description
GO:0010032 IMP meiotic chromosome condensation
GO:0045132 IMP meiotic chromosome segregation
GO:0051383 IMP kinetochore organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344722 SMC4-007 protein_coding Homo_sapiens 0 1199
ENST00000357388 SMC4-001 protein_coding Homo_sapiens 0 1199
ENST00000462787 SMC4-006 protein_coding Homo_sapiens 0 1199
ENST00000465563 SMC4-019 retained_intron Homo_sapiens 0 418
ENST00000465903 SMC4-010 protein_coding Homo_sapiens 0 575
ENST00000466326 IFT80-006 processed_transcript Homo_sapiens 1e-20 104
ENST00000467468 SMC4-014 protein_coding Homo_sapiens 0 717
ENST00000468653 SMC4-002 retained_intron Homo_sapiens 0 1166
ENST00000469762 SMC4-003 protein_coding Homo_sapiens 0 1061
ENST00000469858 SMC4-004 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000470240 SMC4-017 processed_transcript Homo_sapiens 0 575
ENST00000472282 SMC4-013 processed_transcript Homo_sapiens 0 531
ENST00000472991 SMC4-012 protein_coding Homo_sapiens 0 665
ENST00000485645 SMC4-011 protein_coding Homo_sapiens 0 584
ENST00000485867 SMC4-016 protein_coding Homo_sapiens 0 715
ENST00000489573 SMC4-005 protein_coding Homo_sapiens 0 1199
ENST00000490207 SMC4-015 protein_coding Homo_sapiens 0 616
ENST00000494612 SMC4-020 processed_transcript Homo_sapiens 0 226
ENST00000497311 SMC4-009 protein_coding Homo_sapiens 0 586
ENST00000497984 SMC4-018 processed_transcript Homo_sapiens 0 606

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