C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000462787 SMC4-006 ENSG00000113810 9606 + 3:160399668-160433990 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastLungENST00000462787
Transcript ID Bladder Breast Lung
ENST00000462787 0.956±0.00 2.014±0.00 2.747±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0002 CGP 3:160256986-160434962
CIL_0004JQ CIL_0004JQ_0002 CGP 3:160399274-160485773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000070 TAS mitotic sister chromatid segregation
GO:0000278 TAS mitotic cell cycle
GO:0000796 IDA condensin complex
GO:0004888 IEA transmembrane signaling receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005524 TAS:IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 IEA chromosome
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006935 IEA chemotaxis
GO:0007076 IDA mitotic chromosome condensation
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0046982 IPI protein heterodimerization activity
GO:0051276 IEA chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042901 Smc4-001 protein_coding Mus_musculus 0 3391
ENSMUST00000148385 Smc4-002 nonsense_mediated_decay Mus_musculus 0 3362
ENSMUST00000107803 Smc4-004 protein_coding Mus_musculus 0 3249
ENSMUST00000136502 Smc4-003 protein_coding Mus_musculus 0 1199
ENSMUST00000149174 Smc4-008 processed_transcript Mus_musculus 0 446
ENSMUST00000128134 Smc4-005 retained_intron Mus_musculus 0 231
ENSMUST00000124983 Smc4-006 processed_transcript Mus_musculus 0 228
ENSMUST00000128118 Smc4-009 retained_intron Mus_musculus 0 224
ENSMUST00000156354 Smc4-007 retained_intron Mus_musculus 0 394

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