C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: structural maintenance of chromosomes 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494612 SMC4-020 ENSG00000113810 9606 + 3:160412022-160413583 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0002 CGP 3:160256986-160434962
CIL_0004JQ CIL_0004JQ_0002 CGP 3:160399274-160485773

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148385 Smc4-002 nonsense_mediated_decay Mus_musculus 0 226
ENSMUST00000107803 Smc4-004 protein_coding Mus_musculus 0 226
ENSMUST00000136502 Smc4-003 protein_coding Mus_musculus 0 226
ENSMUST00000042901 Smc4-001 protein_coding Mus_musculus 0 226
ENSMUST00000124983 Smc4-006 processed_transcript Mus_musculus 6e-28 128
ENSMUST00000128134 Smc4-005 retained_intron Mus_musculus 2e-23 113
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.000000005 66
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.000000005 66

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