C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: signal sequence receptor, delta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136544 Ssr4-004 ENSMUSG00000002014 10090 + X:73787182-73789092 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000136544
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000136544 18.158±0.00 54.822±6.33 120.814±31.09 4.386±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UU CIL_0001UU_0002 CGP X:73778963-73790830
CIL_0001UT CIL_0001UT_0002 CGP X:73787028-73824969

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320857 SSR4-005 protein_coding Homo_sapiens 0 231
ENST00000370085 SSR4-001 protein_coding Homo_sapiens 0 233
ENST00000370086 SSR4-006 protein_coding Homo_sapiens 0 239
ENST00000370087 SSR4-009 protein_coding Homo_sapiens 0 228
ENST00000460616 SSR4-008 processed_transcript Homo_sapiens 7e-23 113
ENST00000471724 SSR4-011 processed_transcript Homo_sapiens 3e-20 102
ENST00000482902 SSR4-007 processed_transcript Homo_sapiens 3e-36 158
ENST00000491833 SSR4-010 processed_transcript Homo_sapiens 6e-20 102

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