C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | RNA binding motif protein 39 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000137340  |
Rbm39-004 |
ENSMUSG00000027620 |
10090 | - |
2:156178561-156180145  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008EI | CIL_0008EI_0002 | VISTA | 2:155562263-156164147 |
| CIL_0000WY | CIL_0000WY_0002 | CGP | 2:156144039-156180238 |
| CIL_0000X2 | CIL_0000X2_0002 | CGP | 2:156147239-156309952 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000253363
|
RBM39-002 | protein_coding | Homo_sapiens | 4e-20 | 104 |
|
ENST00000338163
|
RBM39-008 | nonsense_mediated_decay | Homo_sapiens | 0 | 315 |
|
ENST00000361162
|
RBM39-001 | protein_coding | Homo_sapiens | 0 | 315 |
|
ENST00000374038
|
RBM39-020 | protein_coding | Homo_sapiens | 0 | 315 |
|
ENST00000397370
|
RBM39-013 | protein_coding | Homo_sapiens | 0 | 315 |
|
ENST00000403542
|
RBM39-006 | nonsense_mediated_decay | Homo_sapiens | 0 | 451 |
|
ENST00000412738
|
RBM39-017 | nonsense_mediated_decay | Homo_sapiens | 0 | 320 |
|
ENST00000416108
|
RBM39-043 | nonsense_mediated_decay | Homo_sapiens | 0 | 235 |
|
ENST00000416529
|
RBM39-024 | nonsense_mediated_decay | Homo_sapiens | 5e-24 | 115 |
|
ENST00000425184
|
RBM39-021 | nonsense_mediated_decay | Homo_sapiens | 9e-31 | 137 |
|
ENST00000429968
|
RBM39-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 315 |
|
ENST00000433027
|
RBM39-045 | nonsense_mediated_decay | Homo_sapiens | 0 | 315 |
|
ENST00000434927
|
RBM39-018 | protein_coding | Homo_sapiens | 6e-19 | 99 |
|
ENST00000442447
|
RBM39-016 | processed_transcript | Homo_sapiens | 0 | 254 |
|
ENST00000444878
|
RBM39-007 | nonsense_mediated_decay | Homo_sapiens | 0 | 451 |
|
ENST00000449489
|
RBM39-044 | nonsense_mediated_decay | Homo_sapiens | 0 | 235 |
|
ENST00000453310
|
RBM39-012 | nonsense_mediated_decay | Homo_sapiens | 0 | 451 |
|
ENST00000455343
|
RBM39-019 | nonsense_mediated_decay | Homo_sapiens | 0 | 241 |
|
ENST00000461849
|
RBM39-014 | retained_intron | Homo_sapiens | 0 | 806 |
|
ENST00000463004
|
RBM39-004 | retained_intron | Homo_sapiens | 0 | 496 |
|
ENST00000463098
|
RBM39-003 | processed_transcript | Homo_sapiens | 0 | 451 |
|
ENST00000493853
|
RBM39-042 | retained_intron | Homo_sapiens | 0 | 263 |
|
ENST00000528062
|
RBM39-015 | protein_coding | Homo_sapiens | 0 | 315 |
