C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434927 RBM39-018 ENSG00000131051 9606 - 20:35724676-35741609 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000434927
Transcript ID Ovary Placenta Testis
ENST00000434927 54.538±0.00 28.026±0.00 31.408±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WY CIL_0000WY_0001 CGP 20:35699272-35742312
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029149 Rbm39-018 protein_coding Mus_musculus 0 833
ENSMUST00000142071 Rbm39-026 nonsense_mediated_decay Mus_musculus 0 833
ENSMUST00000146297 Rbm39-003 protein_coding Mus_musculus 0 833
ENSMUST00000109587 Rbm39-001 protein_coding Mus_musculus 0 833
ENSMUST00000126992 Rbm39-020 protein_coding Mus_musculus 0 819
ENSMUST00000155837 Rbm39-002 nonsense_mediated_decay Mus_musculus 0 741
ENSMUST00000153514 Rbm39-025 nonsense_mediated_decay Mus_musculus 0 654
ENSMUST00000138381 Rbm39-015 retained_intron Mus_musculus 0 512
ENSMUST00000131625 Rbm39-016 processed_transcript Mus_musculus 0 429
ENSMUST00000146288 Rbm39-021 protein_coding Mus_musculus 0 409
ENSMUST00000130516 Rbm39-006 retained_intron Mus_musculus 0 355
ENSMUST00000140001 Rbm39-010 processed_transcript Mus_musculus 0 305
ENSMUST00000182280 Gm8816-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000161037 Gm8837-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000150272 Rbm39-011 processed_transcript Mus_musculus 0 202
ENSMUST00000109584 Rbm39-022 protein_coding Mus_musculus 2.00386e-43 180
ENSMUST00000147098 Rbm39-013 nonsense_mediated_decay Mus_musculus 2.00386e-43 180
ENSMUST00000128243 Rbm39-012 retained_intron Mus_musculus 3e-21 106
ENSMUST00000154677 Rbm39-024 nonsense_mediated_decay Mus_musculus 2e-19 100
ENSMUST00000137340 Rbm39-004 retained_intron Mus_musculus 6e-19 99
ENSMUST00000152919 Rbm39-005 nonsense_mediated_decay Mus_musculus 6e-19 99
ENSMUST00000132929 Rbm39-007 retained_intron Mus_musculus 6e-19 99
ENSMUST00000137566 Rbm39-009 nonsense_mediated_decay Mus_musculus 6e-19 99
ENSMUST00000146549 Rbm39-008 nonsense_mediated_decay Mus_musculus 6e-19 99

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