C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374038 RBM39-020 ENSG00000131051 9606 - 20:35721867-35742258 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLiverLungPlacentaENST00000374038
Transcript ID Adipose Brain Colon Heart Liver Lung Placenta
ENST00000374038 43.367±0.00 28.263±0.00 34.417±0.00 16.888±0.00 13.002±0.00 48.162±0.00 20.704±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WY CIL_0000WY_0001 CGP 20:35699272-35742312
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109587 Rbm39-001 protein_coding Mus_musculus 0 1242
ENSMUST00000029149 Rbm39-018 protein_coding Mus_musculus 0 1221
ENSMUST00000126992 Rbm39-020 protein_coding Mus_musculus 0 1205
ENSMUST00000142071 Rbm39-026 nonsense_mediated_decay Mus_musculus 0 1203
ENSMUST00000146297 Rbm39-003 protein_coding Mus_musculus 0 981
ENSMUST00000155837 Rbm39-002 nonsense_mediated_decay Mus_musculus 0 887
ENSMUST00000153514 Rbm39-025 nonsense_mediated_decay Mus_musculus 0 800
ENSMUST00000146288 Rbm39-021 protein_coding Mus_musculus 0 651
ENSMUST00000138381 Rbm39-015 retained_intron Mus_musculus 0 492
ENSMUST00000109584 Rbm39-022 protein_coding Mus_musculus 0 442
ENSMUST00000131625 Rbm39-016 processed_transcript Mus_musculus 0 436
ENSMUST00000147098 Rbm39-013 nonsense_mediated_decay Mus_musculus 0 399
ENSMUST00000135274 Rbm39-017 retained_intron Mus_musculus 0 399
ENSMUST00000148794 Rbm39-019 protein_coding Mus_musculus 0 398
ENSMUST00000182280 Gm8816-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000128243 Rbm39-012 retained_intron Mus_musculus 0 368
ENSMUST00000132929 Rbm39-007 retained_intron Mus_musculus 0 361
ENSMUST00000161037 Gm8837-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000146549 Rbm39-008 nonsense_mediated_decay Mus_musculus 0 340
ENSMUST00000130516 Rbm39-006 retained_intron Mus_musculus 0 337
ENSMUST00000137566 Rbm39-009 nonsense_mediated_decay Mus_musculus 0 335
ENSMUST00000152919 Rbm39-005 nonsense_mediated_decay Mus_musculus 0 322
ENSMUST00000137340 Rbm39-004 retained_intron Mus_musculus 0 315
ENSMUST00000140001 Rbm39-010 processed_transcript Mus_musculus 0 305
ENSMUST00000150272 Rbm39-011 processed_transcript Mus_musculus 7.9874e-44 182
ENSMUST00000154677 Rbm39-024 nonsense_mediated_decay Mus_musculus 2e-24 117
ENSMUST00000120746 Ncald-002 protein_coding Mus_musculus 0.0002 53
ENSMUST00000119730 Ncald-003 protein_coding Mus_musculus 0.0002 53
ENSMUST00000132423 Ncald-011 processed_transcript Mus_musculus 0.00004 53

Loading