C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000593157 TRMT1-003 ENSG00000104907 9606 - 19:13104907-13116740 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000593157
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000593157 2.869±0.00 11.897±0.00 2.317±0.00 4.772±0.00 2.596±0.00 0.545±0.49 6.161±0.00 0.309±0.00 4.623±0.00 6.682±2.30 0.988±0.00 6.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109768 Trmt1-003 protein_coding Mus_musculus 0 1530
ENSMUST00000109767 Trmt1-002 protein_coding Mus_musculus 0 1530
ENSMUST00000001974 Trmt1-001 protein_coding Mus_musculus 0 1530
ENSMUST00000125370 Trmt1-018 protein_coding Mus_musculus 0 857
ENSMUST00000137953 Trmt1-009 retained_intron Mus_musculus 0 833
ENSMUST00000128022 Trmt1-014 processed_transcript Mus_musculus 0 745
ENSMUST00000177084 Trmt1-007 protein_coding Mus_musculus 0 691
ENSMUST00000177286 Trmt1-027 processed_transcript Mus_musculus 0 625
ENSMUST00000077990 Trmt1-006 processed_transcript Mus_musculus 0 436
ENSMUST00000177531 Trmt1-019 protein_coding Mus_musculus 0 359
ENSMUST00000175884 Trmt1-029 nonsense_mediated_decay Mus_musculus 0 305
ENSMUST00000175704 Trmt1-028 retained_intron Mus_musculus 0 219
ENSMUST00000138300 Trmt1-016 retained_intron Mus_musculus 8e-32 143

Loading