C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357720 TRMT1-201 ENSG00000104907 9606 - 19:13104902-13116749 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357720 5.945±0.00 3.091±0.00 0.615±0.00 3.620±1.93 3.578±1.89 3.397±0.00 3.473±0.00 5.719±0.00 2.879±2.60 1.475±0.66 9.528±8.87 9.526±5.86 11.424±3.80 9.830±3.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0003723 IEA RNA binding
GO:0004809 IEA tRNA (guanine-N2-)-methyltransferase activity
GO:0008033 IEA tRNA processing
GO:0030488 IEA tRNA methylation
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001974 Trmt1-001 protein_coding Mus_musculus 0 1688
ENSMUST00000109767 Trmt1-002 protein_coding Mus_musculus 0 1652
ENSMUST00000109768 Trmt1-003 protein_coding Mus_musculus 0 1633
ENSMUST00000137953 Trmt1-009 retained_intron Mus_musculus 0 937
ENSMUST00000125370 Trmt1-018 protein_coding Mus_musculus 0 878
ENSMUST00000128022 Trmt1-014 processed_transcript Mus_musculus 0 745
ENSMUST00000177084 Trmt1-007 protein_coding Mus_musculus 0 691
ENSMUST00000177286 Trmt1-027 processed_transcript Mus_musculus 0 641
ENSMUST00000077990 Trmt1-006 processed_transcript Mus_musculus 0 455
ENSMUST00000177531 Trmt1-019 protein_coding Mus_musculus 0 379
ENSMUST00000175884 Trmt1-029 nonsense_mediated_decay Mus_musculus 0 305
ENSMUST00000175704 Trmt1-028 retained_intron Mus_musculus 0 219
ENSMUST00000138300 Trmt1-016 retained_intron Mus_musculus 8e-32 143

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