C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | tRNA methyltransferase 1 homolog (S. cerevisiae) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000592062  |
TRMT1-001 |
ENSG00000104907 |
9606 | - |
19:13104907-13117567  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007VV | CIL_0007VV_0001 | VISTA | 19:12752697-13356541 |
| CIL_0007ZV | CIL_0007ZV_0001 | VISTA | 19:12767682-13372012 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000049 | IEA | tRNA binding |
| GO:0003723 | IEA | RNA binding |
| GO:0004809 | IEA | tRNA (guanine-N2-)-methyltransferase activity |
| GO:0008033 | IEA | tRNA processing |
| GO:0030488 | IEA | tRNA methylation |
| GO:0044822 | IDA | poly(A) RNA binding |
| GO:0046872 | IEA | metal ion binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000001974
|
Trmt1-001 | protein_coding | Mus_musculus | 0 | 1700 |
|
ENSMUST00000109767
|
Trmt1-002 | protein_coding | Mus_musculus | 0 | 1652 |
|
ENSMUST00000109768
|
Trmt1-003 | protein_coding | Mus_musculus | 0 | 1633 |
|
ENSMUST00000137953
|
Trmt1-009 | retained_intron | Mus_musculus | 0 | 937 |
|
ENSMUST00000125370
|
Trmt1-018 | protein_coding | Mus_musculus | 0 | 878 |
|
ENSMUST00000128022
|
Trmt1-014 | processed_transcript | Mus_musculus | 0 | 745 |
|
ENSMUST00000177084
|
Trmt1-007 | protein_coding | Mus_musculus | 0 | 691 |
|
ENSMUST00000177286
|
Trmt1-027 | processed_transcript | Mus_musculus | 0 | 641 |
|
ENSMUST00000077990
|
Trmt1-006 | processed_transcript | Mus_musculus | 0 | 455 |
|
ENSMUST00000177531
|
Trmt1-019 | protein_coding | Mus_musculus | 0 | 379 |
|
ENSMUST00000175884
|
Trmt1-029 | nonsense_mediated_decay | Mus_musculus | 0 | 305 |
|
ENSMUST00000175704
|
Trmt1-028 | retained_intron | Mus_musculus | 0 | 219 |
|
ENSMUST00000138300
|
Trmt1-016 | retained_intron | Mus_musculus | 1e-31 | 143 |
