C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongation factor Tu GTP binding domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138483 Eftud2-010 ENSMUSG00000020929 10090 - 11:102862611-102877690 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaENSMUST00000138483
Transcript ID Brain Ovary Placenta
ENSMUST00000138483 52.913±0.00 42.442±0.00 75.688±19.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0006U5 CIL_0006U5_0002 CGP 11:102835849-102880985
CIL_0006UA CIL_0006UA_0002 CGP 11:102838473-102885216

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017172 eftud2-201 protein_coding Danio_rerio 0 399
ENSDART00000130575 eftud2-202 protein_coding Danio_rerio 0 399
ENSDART00000127309 eftud2-002 protein_coding Danio_rerio 0 399
ENSDART00000140067 eftud2-003 protein_coding Danio_rerio 0 399
ENSDART00000136465 eftud2-001 protein_coding Danio_rerio 0 399
ENST00000402521 EFTUD2-004 protein_coding Homo_sapiens 0 837
ENST00000426333 EFTUD2-002 protein_coding Homo_sapiens 0 837
ENST00000587957 EFTUD2-019 retained_intron Homo_sapiens 0 307
ENST00000588374 EFTUD2-015 nonsense_mediated_decay Homo_sapiens 0 747
ENST00000589475 EFTUD2-018 retained_intron Homo_sapiens 0 231
ENST00000589825 EFTUD2-010 retained_intron Homo_sapiens 0 219
ENST00000590105 EFTUD2-013 retained_intron Homo_sapiens 9e-30 134
ENST00000591382 EFTUD2-006 protein_coding Homo_sapiens 0 837
ENST00000592408 EFTUD2-012 retained_intron Homo_sapiens 1e-29 134
ENST00000592576 EFTUD2-003 protein_coding Homo_sapiens 0 590
ENST00000592701 EFTUD2-014 protein_coding Homo_sapiens 0.000000000000001 88
ENST00000593072 EFTUD2-011 protein_coding Homo_sapiens 0 237
ENST00000593200 EFTUD2-017 retained_intron Homo_sapiens 0 527

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