C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MMS22-like, DNA repair protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138567 Mms22l-005 ENSMUSG00000045751 10090 + 4:24496462-24503413 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000138567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000138567 0.988±0.12 1.295±0.33 0.785±0.21 2.679±2.03 1.309±0.24 1.385±0.68 0.100±0.02 0.277±0.08 3.363±3.38 0.581±0.11 0.071±0.02 1.302±0.27 2.482±1.68 1.594±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MX CIL_0007MX_0004 UCNEbase 4:22803646-24698662
CIL_0008CQ CIL_0008CQ_0002 VISTA 4:23912230-24515243
CIL_0007TH CIL_0007TH_0002 VISTA 4:24128853-24730297
CIL_00096U CIL_00096U_0002 VISTA 4:24369206-24970330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000275053 MMS22L-001 protein_coding Homo_sapiens 0 531
ENST00000369251 MMS22L-010 protein_coding Homo_sapiens 0 531
ENST00000496119 MMS22L-002 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000508820 MMS22L-005 retained_intron Homo_sapiens 0 566
ENST00000508976 MMS22L-007 retained_intron Homo_sapiens 0 531
ENST00000509383 MMS22L-006 nonsense_mediated_decay Homo_sapiens 0 529

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