C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: MMS22-like, DNA repair protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000045751 Mms22l 10090 + 4:24496451-24602950 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050446 Mms22l-008 24496544-24602946 protein_coding
  ENSMUST00000108222 Mms22l-001 24496451-24602950 protein_coding
  ENSMUST00000123984 Mms22l-010 24578848-24591208 processed_transcript
  ENSMUST00000131282 Mms22l-003 24507434-24599984 nonsense_mediated_decay
  ENSMUST00000138567 Mms22l-005 24496462-24503413 protein_coding
  ENSMUST00000139050 Mms22l-004 24496465-24497044 processed_transcript
  ENSMUST00000154349 Mms22l-002 24505162-24602949 retained_intron
  ENSMUST00000154496 Mms22l-006 24536348-24574795 protein_coding
  ENSMUST00000172622 Mms22l-009 24497896-24529163 protein_coding
  ENSMUST00000173079 Mms22l-007 24496451-24581338 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050446ENSMUST00000108222ENSMUST00000123984ENSMUST00000131282ENSMUST00000138567ENSMUST00000154349ENSMUST00000154496ENSMUST00000172622ENSMUST00000173079
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050446 0.121±0.00 N/A N/A N/A 0.422±0.12 N/A N/A N/A 0.565±0.00 N/A 0.014±0.00 0.917±0.39 0.408±0.00 0.564±0.06
ENSMUST00000108222 0.674±0.28 0.356±0.00 0.551±0.23 1.816±0.17 0.570±0.12 0.960±0.18 0.088±0.02 0.348±0.05 4.629±3.33 0.758±0.00 N/A 1.537±0.63 3.540±1.75 1.160±0.60
ENSMUST00000123984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A 3.460±0.00
ENSMUST00000131282 N/A N/A N/A N/A 0.276±0.00 N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A
ENSMUST00000138567 0.988±0.12 1.295±0.33 0.785±0.21 2.679±2.03 1.309±0.24 1.385±0.68 0.100±0.02 0.277±0.08 3.363±3.38 0.581±0.11 0.071±0.02 1.302±0.27 2.482±1.68 1.594±0.24
ENSMUST00000154349 0.344±0.00 N/A 0.224±0.00 1.324±0.04 0.373±0.17 0.598±0.00 0.081±0.07 N/A 1.655±0.71 N/A 0.024±0.01 0.631±0.00 0.874±0.09 0.801±0.00
ENSMUST00000154496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A N/A N/A
ENSMUST00000172622 N/A N/A N/A 0.155±0.00 N/A N/A N/A N/A N/A N/A 0.036±0.03 N/A N/A N/A
ENSMUST00000173079 N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MX CIL_0007MX_0004 UCNEbase 4:22803646-24698662
CIL_0008CQ CIL_0008CQ_0002 VISTA 4:23912230-24515243
CIL_0007TH CIL_0007TH_0002 VISTA 4:24128853-24730297
CIL_00096U CIL_00096U_0002 VISTA 4:24369206-24970330

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0031297 ISS replication fork processing
GO:0035101 ISS FACT complex
GO:0042555 ISS MCM complex
GO:0043596 ISS nuclear replication fork

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074691 mms22l MMS22-like, DNA repair protein protein_coding Danio_rerio
ENSG00000146263 MMS22L MMS22-like, DNA repair protein protein_coding Homo_sapiens

Loading