C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MMS22-like, DNA repair protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000275053 MMS22L-001 ENSG00000146263 9606 - 6:97142161-97283176 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartLiverLungOvaryPlacentaTestisENST00000275053
Transcript ID Adipose Adrenal Brain Colon Heart Liver Lung Ovary Placenta Testis
ENST00000275053 0.103±0.00 0.439±0.00 0.307±0.00 0.234±0.00 0.062±0.00 0.276±0.25 0.105±0.00 0.295±0.14 0.371±0.26 0.807±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096U CIL_00096U_0001 VISTA 6:96796735-97397883
CIL_0001Y2 CIL_0001Y2_0002 CGP 6:96924620-97283217
CIL_0007TH CIL_0007TH_0001 VISTA 6:97006167-97607637
CIL_0007MX CIL_0007MX_0001 UCNEbase 6:97068636-99185945
CIL_0001Y3 CIL_0001Y3_0002 CGP 6:97142161-98839490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0031297 IMP replication fork processing
GO:0035101 IDA FACT complex
GO:0042555 IDA MCM complex
GO:0043596 IDA nuclear replication fork

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108222 Mms22l-001 protein_coding Mus_musculus 0 3500
ENSMUST00000154349 Mms22l-002 retained_intron Mus_musculus 0 2963
ENSMUST00000173079 Mms22l-007 retained_intron Mus_musculus 0 2556
ENSMUST00000050446 Mms22l-008 protein_coding Mus_musculus 0 2326
ENSMUST00000131282 Mms22l-003 nonsense_mediated_decay Mus_musculus 0 2198
ENSMUST00000123984 Mms22l-010 processed_transcript Mus_musculus 0 616
ENSMUST00000138567 Mms22l-005 protein_coding Mus_musculus 0 531
ENSMUST00000172622 Mms22l-009 protein_coding Mus_musculus 0 377
ENSMUST00000154496 Mms22l-006 protein_coding Mus_musculus 0 329
ENSMUST00000139050 Mms22l-004 processed_transcript Mus_musculus 3e-31 143

Loading