C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 174
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138868 Ccdc174-003 ENSMUSG00000034083 10090 + 6:91878075-91884987 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000138868
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000138868 0.339±0.04 0.505±0.02 0.389±0.05 0.266±0.04 0.120±0.03 0.196±0.01 0.455±0.20 0.379±0.12 0.324±0.10 0.513±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000515 CIL_000515_0002 CGP 6:91761509-91899843
CIL_0007GG CIL_0007GG_0002 CGP 6:91878053-91950640

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000270625 RPS11-001 protein_coding Homo_sapiens 0 231
ENST00000303688 CCDC174-004 protein_coding Homo_sapiens 0 324
ENST00000383794 CCDC174-001 protein_coding Homo_sapiens 0 324
ENST00000442125 RPS11P7-001 processed_pseudogene Homo_sapiens 3e-35 152
ENST00000463438 CCDC174-005 retained_intron Homo_sapiens 0 324
ENST00000465759 CCDC174-003 retained_intron Homo_sapiens 0 324
ENST00000488441 RPS11P5-001 processed_pseudogene Homo_sapiens 0 209
ENST00000573092 CTC-479C5.11-001 processed_pseudogene Homo_sapiens 4e-19 97
ENST00000594493 RPS11-003 protein_coding Homo_sapiens 0 220
ENST00000599167 RPS11-004 retained_intron Homo_sapiens 1e-27 128
ENST00000599561 RPS11-008 protein_coding Homo_sapiens 3e-29 132
ENST00000600027 RPS11-005 retained_intron Homo_sapiens 1e-27 128
ENST00000601306 RPS11-009 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000602252 RPS11-002 retained_intron Homo_sapiens 1e-36 158
ENST00000611584 CCDC174-201 protein_coding Homo_sapiens 0 324

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