C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 1 (alpha)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558347 TPM1-009 ENSG00000140416 9606 + 15:63042755-63071885 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryPlacentaENST00000558347
Transcript ID Breast Ovary Placenta
ENST00000558347 65.741±0.00 49.911±0.00 170.295±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000502 CIL_000502_0002 CGP 15:62390526-63071915
CIL_00094O CIL_00094O_0001 VISTA 15:62748846-63351985
CIL_00098V CIL_00098V_0001 VISTA 15:62790346-63394142

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129733 Tpm1-009 nonsense_mediated_decay Mus_musculus 0 1445
ENSMUST00000139046 Tpm1-017 nonsense_mediated_decay Mus_musculus 0 822
ENSMUST00000113697 Tpm1-006 protein_coding Mus_musculus 0 822
ENSMUST00000113701 Tpm1-010 protein_coding Mus_musculus 0 822
ENSMUST00000113696 Tpm1-015 protein_coding Mus_musculus 0 822
ENSMUST00000034928 Tpm1-008 protein_coding Mus_musculus 0 678
ENSMUST00000113695 Tpm1-016 protein_coding Mus_musculus 0 678
ENSMUST00000113707 Tpm1-001 protein_coding Mus_musculus 0 678
ENSMUST00000113705 Tpm1-007 protein_coding Mus_musculus 0 678
ENSMUST00000131279 Tpm1-018 processed_transcript Mus_musculus 0 630
ENSMUST00000030185 Tpm1-002 protein_coding Mus_musculus 0 630
ENSMUST00000050905 Tpm1-004 protein_coding Mus_musculus 0 630
ENSMUST00000113685 Tpm1-003 protein_coding Mus_musculus 0 630
ENSMUST00000113693 Tpm1-011 protein_coding Mus_musculus 0 627
ENSMUST00000113687 Tpm1-012 protein_coding Mus_musculus 0 606
ENSMUST00000129466 Tpm1-019 retained_intron Mus_musculus 0 566
ENSMUST00000113684 Tpm1-020 protein_coding Mus_musculus 0 449
ENSMUST00000113689 Tpm1-021 protein_coding Mus_musculus 0 449
ENSDART00000039657 tpma-201 protein_coding Danio_rerio 0 407
ENSMUST00000113690 Tpm1-013 protein_coding Mus_musculus 0 379
ENSMUST00000107913 Tpm2-201 protein_coding Mus_musculus 0 311
ENSMUST00000107914 Tpm2-001 protein_coding Mus_musculus 0 311
ENSMUST00000030184 Tpm2-002 protein_coding Mus_musculus 0 311
ENSMUST00000150262 Tpm2-003 processed_transcript Mus_musculus 0 311
ENSMUST00000113686 Tpm1-014 protein_coding Mus_musculus 0 305
ENSMUST00000150592 Tpm2-004 protein_coding Mus_musculus 0 250
ENSMUST00000156899 Tpm1-005 processed_transcript Mus_musculus 2.8026e-45 187
ENSDART00000054763 tpma-202 protein_coding Danio_rerio 7.00005e-41 172

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