C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member Y
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304332 H2AFY-004 ENSG00000113648 9606 - 5:135334383-135399887 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000304332
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000304332 25.814±0.00 23.118±0.00 8.655±5.04 13.683±0.00 21.380±0.00 14.563±11.60 4.941±0.00 14.802±0.00 30.223±4.34 32.436±18.13 19.977±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083J CIL_00083J_0001 VISTA 5:135133909-135736454

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000182 IDA rDNA binding
GO:0000786 NAS:IEA nucleosome
GO:0000790 IDA nuclear chromatin
GO:0001739 TAS sex chromatin
GO:0001740 IDA Barr body
GO:0003677 NAS:IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005721 IDA pericentric heterochromatin
GO:0005730 IDA nucleolus
GO:0006334 NAS:IEA nucleosome assembly
GO:0007549 IDA dosage compensation
GO:0010385 IDA double-stranded methylated DNA binding
GO:0016568 IEA chromatin modification
GO:0019901 IPI protein kinase binding
GO:0030291 IMP protein serine/threonine kinase inhibitor activity
GO:0031490 IDA chromatin DNA binding
GO:0033128 IMP negative regulation of histone phosphorylation
GO:0035098 IDA ESC/E(Z) complex
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045814 IMP negative regulation of gene expression, epigenetic
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome
GO:0071169 IMP establishment of protein localization to chromatin
GO:0071901 IMP negative regulation of protein serine/threonine kinase activity
GO:1901837 IGI negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:1902750 IMP negative regulation of cell cycle G2/M phase transition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016081 H2afy-001 protein_coding Mus_musculus 0 1709
ENSMUST00000045788 H2afy-002 protein_coding Mus_musculus 0 1434
ENSMUST00000139511 H2afy-003 processed_transcript Mus_musculus 0 736
ENSMUST00000141031 H2afy-004 retained_intron Mus_musculus 0 606
ENSMUST00000137835 H2afy-008 retained_intron Mus_musculus 0 588
ENSMUST00000141589 H2afy-007 retained_intron Mus_musculus 0 584
ENSMUST00000154778 H2afy-005 processed_transcript Mus_musculus 0 453
ENSMUST00000154564 H2afy-006 processed_transcript Mus_musculus 0 435

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