C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2ah
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377459 HIST1H2AH-001 ENSG00000274997 9606 + 6:27147129-27147515 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000377459
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000377459 0.419±0.29 39.308±0.00 77.670±0.00 0.136±0.00 2.296±2.18 4.380±0.00 9.334±0.00 20.932±29.28 0.200±0.00 0.556±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0001 VISTA 6:27032592-27634418
CIL_0000UC CIL_0000UC_0007 CGP 6:27146418-27147515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171127 Hist1h2ac-001 protein_coding Mus_musculus 0 470
ENSMUST00000070124 Hist1h2ai-001 protein_coding Mus_musculus 0 464
ENSMUST00000091742 Hist1h2ah-001 protein_coding Mus_musculus 0 464
ENSMUST00000091751 Hist1h2an-001 protein_coding Mus_musculus 0 459
ENSMUST00000090776 Hist1h2ad-001 protein_coding Mus_musculus 0 459
ENSMUST00000091741 Hist1h2ag-001 protein_coding Mus_musculus 0 459
ENSMUST00000081342 Hist1h2ap-001 protein_coding Mus_musculus 0 459
ENSMUST00000091745 Hist1h2ao-001 protein_coding Mus_musculus 0 459
ENSMUST00000102969 Hist1h2ae-001 protein_coding Mus_musculus 0 453
ENSMUST00000073261 Hist1h2af-001 protein_coding Mus_musculus 0 453
ENSMUST00000078756 Hist2h2aa2-001 protein_coding Mus_musculus 0 448
ENSMUST00000074976 Hist2h2aa1-001 protein_coding Mus_musculus 0 448
ENSMUST00000078369 Hist1h2ab-001 protein_coding Mus_musculus 0 436
ENSMUST00000074752 Hist1h2ak-001 protein_coding Mus_musculus 0 431
ENSMUST00000091708 Hist1h2al-201 protein_coding Mus_musculus 0 431
ENSMUST00000090782 Hist2h2ac-001 protein_coding Mus_musculus 0 416
ENSMUST00000091710 Hist1h2aj-001 unprocessed_pseudogene Mus_musculus 0 399
ENSMUST00000074556 H2afj-001 protein_coding Mus_musculus 0 398
ENSMUST00000108817 Hist3h2a-001 protein_coding Mus_musculus 0 398
ENSMUST00000047697 Trim17-002 protein_coding Mus_musculus 0 398
ENSMUST00000052686 H2afx-001 protein_coding Mus_musculus 0 379
ENSDART00000129969 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 333
ENSDART00000073402 protein_coding Danio_rerio 0 300
ENSMUST00000072391 Hist1h2aa-001 protein_coding Mus_musculus 0 294
ENSMUST00000118168 Gm11336-001 unprocessed_pseudogene Mus_musculus 0 272
ENSMUST00000154564 H2afy-006 processed_transcript Mus_musculus 2e-21 106
ENSMUST00000154778 H2afy-005 processed_transcript Mus_musculus 2e-21 106
ENSMUST00000141031 H2afy-004 retained_intron Mus_musculus 2e-21 106
ENSMUST00000139511 H2afy-003 processed_transcript Mus_musculus 2e-21 106
ENSMUST00000045788 H2afy-002 protein_coding Mus_musculus 2e-21 106
ENSMUST00000016081 H2afy-001 protein_coding Mus_musculus 2e-21 106

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