C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidic acid phosphatase type 2 domain containing 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424479 PPAPDC1B-001 ENSG00000147535 9606 - 8:38263130-38269220 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000424479
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000424479 4.459±0.00 1.365±0.00 1.819±0.96 3.379±0.00 0.650±0.00 1.580±0.98 5.202±2.38 0.783±0.00 0.277±0.00 4.529±2.18 3.799±0.07 1.855±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0001 VISTA 8:38140056-38746180
CIL_0003YZ CIL_0003YZ_0002 CGP 8:38225218-38275558
CIL_0008SM CIL_0008SM_0001 VISTA 8:38252496-38854674
CIL_0008H7 CIL_0008H7_0001 VISTA 8:38253282-38854976
CIL_0003Z2 CIL_0003Z2_0002 CGP 8:38263130-38382272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005737 TAS cytoplasm
GO:0005886 TAS plasma membrane
GO:0008195 IEA:IDA phosphatidate phosphatase activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0046839 IEA:IDA phospholipid dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068916 Ppapdc1b-001 protein_coding Mus_musculus 0 850
ENSMUST00000139836 Ppapdc1b-005 protein_coding Mus_musculus 0 715
ENSMUST00000138548 Ppapdc1b-007 processed_transcript Mus_musculus 0 713
ENSMUST00000124764 Ppapdc1b-002 nonsense_mediated_decay Mus_musculus 0 708
ENSMUST00000133117 Ppapdc1b-004 retained_intron Mus_musculus 0 460
ENSMUST00000138879 Ppapdc1b-008 retained_intron Mus_musculus 0 431
ENSMUST00000139120 Ppapdc1b-006 retained_intron Mus_musculus 0 390
ENSMUST00000145678 Ppapdc1b-003 nonsense_mediated_decay Mus_musculus 0 318
ENSMUST00000146762 Ppapdc1b-010 retained_intron Mus_musculus 4e-30 137
ENSDART00000135341 ppapdc1b-002 protein_coding Danio_rerio 2e-23 115
ENSDART00000064603 ppapdc1b-001 protein_coding Danio_rerio 2e-23 115

Loading