C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140255 Smarcd2-009 ENSMUSG00000078619 10090 - 11:106264019-106265746 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverOvaryTestisENSMUST00000140255
Transcript ID Breast Kidney Liver Ovary Testis
ENSMUST00000140255 30.072±9.35 15.881±0.00 11.417±0.21 33.637±11.38 9.736±3.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006QA CIL_0006QA_0002 CGP 11:106256154-106272972

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225742 SMARCD2-002 protein_coding Homo_sapiens 0 976
ENST00000323347 SMARCD2-003 protein_coding Homo_sapiens 0 976
ENST00000448276 SMARCD2-001 protein_coding Homo_sapiens 0 976
ENST00000450364 SMARCD2-012 protein_coding Homo_sapiens 0 621
ENST00000584400 SMARCD2-006 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000584483 SMARCD2-010 retained_intron Homo_sapiens 0 481
ENST00000613943 SMARCD2-201 protein_coding Homo_sapiens 0 976

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