C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140481 Hdac5-013 ENSMUSG00000008855 10090 - 11:102196681-102198895 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaTestisENSMUST00000140481
Transcript ID Brain Breast Ovary Placenta Testis
ENSMUST00000140481 39.588±0.00 5.926±0.00 22.061±0.00 7.677±3.97 4.368±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0005J5 CIL_0005J5_0002 CGP 11:102189620-102230166
CIL_0005J4 CIL_0005J4_0002 CGP 11:102194432-102265187

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225983 HDAC5-003 protein_coding Homo_sapiens 0 623
ENST00000336057 HDAC5-001 protein_coding Homo_sapiens 0 623
ENST00000586802 HDAC5-002 protein_coding Homo_sapiens 0 623
ENST00000588419 HDAC5-012 retained_intron Homo_sapiens 6e-29 132
ENST00000592385 HDAC5-004 retained_intron Homo_sapiens 2e-28 132
ENST00000593013 HDAC5-005 retained_intron Homo_sapiens 1e-28 132

Loading