C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000469154  |
SMARCD3-004 |
ENSG00000082014 |
9606 | - |
7:151238974-151275252  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008T1 | CIL_0008T1_0001 | VISTA | 7:150668461-151272977 |
| CIL_0007RX | CIL_0007RX_0001 | VISTA | 7:151109813-151711422 |
| CIL_0000KE | CIL_0000KE_0002 | CGP | 7:151207837-151238827 |
| CIL_0006DG | CIL_0006DG_0002 | CGP | 7:151232489-151277896 |
| CIL_0004EL | CIL_0004EL_0001 | CGP | 7:151238764-151378449 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000147857
|
Smarcd3-006 | retained_intron | Mus_musculus | 0 | 867 |
|
ENSMUST00000030791
|
Smarcd3-001 | protein_coding | Mus_musculus | 0 | 854 |
|
ENSMUST00000144995
|
Smarcd3-002 | retained_intron | Mus_musculus | 0 | 854 |
|
ENSMUST00000143501
|
Smarcd3-004 | retained_intron | Mus_musculus | 0 | 383 |
|
ENSMUST00000145565
|
Smarcd3-003 | retained_intron | Mus_musculus | 0 | 366 |
|
ENSMUST00000144518
|
Smarcd3-008 | retained_intron | Mus_musculus | 0 | 351 |
|
ENSDART00000056641
|
smarcd3a-201 | protein_coding | Danio_rerio | 0 | 320 |
|
ENSDART00000137531
|
smarcd3a-002 | protein_coding | Danio_rerio | 0 | 320 |
|
ENSDART00000140026
|
smarcd3a-001 | protein_coding | Danio_rerio | 0 | 320 |
|
ENSMUST00000140744
|
Smarcd3-005 | retained_intron | Mus_musculus | 0 | 309 |
|
ENSMUST00000088295
|
Chpf2-201 | protein_coding | Mus_musculus | 0 | 287 |
|
ENSMUST00000023759
|
Smarcd1-201 | protein_coding | Mus_musculus | 0 | 281 |
