C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262188 SMARCD3-002 ENSG00000082014 9606 - 7:151238973-151248973 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverMuscleENST00000262188
Transcript ID Breast Colon Heart Liver Muscle
ENST00000262188 5.095±0.00 6.717±0.00 5.350±4.50 1.493±0.00 14.349±10.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0000KE CIL_0000KE_0002 CGP 7:151207837-151238827
CIL_0006DG CIL_0006DG_0002 CGP 7:151232489-151277896
CIL_0004EL CIL_0004EL_0001 CGP 7:151238764-151378449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0002052 IDA positive regulation of neuroblast proliferation
GO:0003007 IEA heart morphogenesis
GO:0003139 IEA secondary heart field specification
GO:0003219 IEA cardiac right ventricle formation
GO:0003407 IEP neural retina development
GO:0003713 NAS transcription coactivator activity
GO:0005102 IPI receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IDA transcription, DNA-templated
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0008134 IPI transcription factor binding
GO:0016514 NAS SWI/SNF complex
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0030374 IMP ligand-dependent nuclear receptor transcription coactivator activity
GO:0035257 IPI nuclear hormone receptor binding
GO:0042692 IEA muscle cell differentiation
GO:0043393 IEA regulation of protein binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030791 Smarcd3-001 protein_coding Mus_musculus 0 2451
ENSMUST00000144995 Smarcd3-002 retained_intron Mus_musculus 0 1764
ENSMUST00000143501 Smarcd3-004 retained_intron Mus_musculus 0 1090
ENSMUST00000147857 Smarcd3-006 retained_intron Mus_musculus 0 922
ENSMUST00000140744 Smarcd3-005 retained_intron Mus_musculus 0 865
ENSDART00000056641 smarcd3a-201 protein_coding Danio_rerio 0 843
ENSDART00000137531 smarcd3a-002 protein_coding Danio_rerio 0 843
ENSDART00000140026 smarcd3a-001 protein_coding Danio_rerio 0 843
ENSMUST00000145565 Smarcd3-003 retained_intron Mus_musculus 0 795
ENSMUST00000023759 Smarcd1-201 protein_coding Mus_musculus 0 556
ENSMUST00000144518 Smarcd3-008 retained_intron Mus_musculus 0 420
ENSMUST00000088295 Chpf2-201 protein_coding Mus_musculus 0 287

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