C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489503 SMARCD3-013 ENSG00000082014 9606 - 7:151241908-151242792 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000489503
Transcript ID Testis
ENST00000489503 29.884±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0000KE CIL_0000KE_0002 CGP 7:151207837-151238827
CIL_0006DG CIL_0006DG_0002 CGP 7:151232489-151277896
CIL_0004EL CIL_0004EL_0001 CGP 7:151238764-151378449

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147857 Smarcd3-006 retained_intron Mus_musculus 0 401
ENSMUST00000030791 Smarcd3-001 protein_coding Mus_musculus 0 401
ENSMUST00000144995 Smarcd3-002 retained_intron Mus_musculus 0 401
ENSMUST00000143501 Smarcd3-004 retained_intron Mus_musculus 0 305
ENSMUST00000145565 Smarcd3-003 retained_intron Mus_musculus 0 278
ENSMUST00000144518 Smarcd3-008 retained_intron Mus_musculus 0 257
ENSMUST00000140744 Smarcd3-005 retained_intron Mus_musculus 4e-28 128

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