C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cold inducible RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140774 Cirbp-002 ENSMUSG00000045193 10090 + 10:80167886-80171137 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000140774
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000140774 13.451±3.61 37.989±9.40 36.311±8.97 51.652±0.00 16.456±4.21 6.447±0.35 9.547±0.76 3.889±1.25 25.790±5.53 7.319±0.29 25.671±9.18 6.468±2.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QP CIL_0000QP_0002 CGP 10:80148272-80172786
CIL_0000QS CIL_0000QS_0002 CGP 10:80165985-80175146

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000413636 CIRBP-008 protein_coding Homo_sapiens 8e-31 139
ENST00000586548 CIRBP-021 protein_coding Homo_sapiens 8e-31 139
ENST00000587169 CIRBP-004 nonsense_mediated_decay Homo_sapiens 1e-30 139
ENST00000587323 CIRBP-029 protein_coding Homo_sapiens 2e-25 121
ENST00000587896 CIRBP-032 protein_coding Homo_sapiens 2e-25 121
ENST00000588230 CIRBP-036 protein_coding Homo_sapiens 8e-19 99
ENST00000589710 CIRBP-005 protein_coding Homo_sapiens 9e-31 139
ENST00000590347 CIRBP-009 nonsense_mediated_decay Homo_sapiens 2e-30 139
ENST00000590704 CIRBP-003 retained_intron Homo_sapiens 7e-31 139
ENST00000591097 CIRBP-010 nonsense_mediated_decay Homo_sapiens 7e-31 139
ENST00000593093 CIRBP-002 retained_intron Homo_sapiens 2e-30 139

Loading