C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility (minor) HA-1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140974 Hmha1-003 ENSMUSG00000035697 10090 + 10:80016739-80031469 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000140974
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000140974 4.402±0.98 1.254±0.00 1.462±0.30 0.166±0.00 47.235±1.96 3.585±1.16 0.507±0.18 1.871±0.65 3.428±1.76 7.979±0.38 0.233±0.04 2.026±0.69 0.665±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000HU CIL_0000HU_0002 CGP 10:79996494-80031472
CIL_00030S CIL_00030S_0002 CGP 10:80016653-80039795

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313093 HMHA1-002 protein_coding Homo_sapiens 0 1729
ENST00000539243 HMHA1-001 protein_coding Homo_sapiens 0 1729
ENST00000543365 HMHA1-004 protein_coding Homo_sapiens 0 1729
ENST00000586033 HMHA1-014 retained_intron Homo_sapiens 0 237
ENST00000586866 HMHA1-007 protein_coding Homo_sapiens 0 1729
ENST00000587602 HMHA1-006 nonsense_mediated_decay Homo_sapiens 0 813
ENST00000590214 HMHA1-003 protein_coding Homo_sapiens 0 1729

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