C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oligophrenin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142267 Ophn1-002 ENSMUSG00000031214 10090 - X:98732392-98890985 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryENSMUST00000142267
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000142267 3.964±0.48 1.855±0.39 4.543±0.79 4.342±0.58 0.963±0.26 0.266±0.09 3.239±1.12 5.345±1.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SR CIL_0001SR_0003 CGP X:98149721-98891025
CIL_0001SQ CIL_0001SQ_0003 CGP X:98554277-98949017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005100 IMP Rho GTPase activator activity
GO:0005515 IPI protein binding
GO:0015629 IDA actin cytoskeleton
GO:0030036 IDA actin cytoskeleton organization
GO:0030100 IMP regulation of endocytosis
GO:0032321 IMP positive regulation of Rho GTPase activity
GO:0043195 IDA terminal bouton
GO:0048488 IGI synaptic vesicle endocytosis
GO:0051966 IMP regulation of synaptic transmission, glutamatergic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336498 ARHGAP10-001 protein_coding Homo_sapiens 0.000000000001 81
ENST00000355520 OPHN1-001 protein_coding Homo_sapiens 0 436
ENST00000491714 OPHN1-005 processed_transcript Homo_sapiens 1e-28 130
ENST00000510379 ARHGAP10-002 retained_intron Homo_sapiens 0.0000000000005 81

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