C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TM2 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143116 Tm2d1-004 ENSMUSG00000028563 10090 - 4:98355605-98383232 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000143116
Transcript ID Adipose Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000143116 17.344±0.00 11.932±0.00 4.716±1.04 10.160±0.60 5.373±2.88 6.912±0.00 13.815±3.16 13.970±4.24 2.008±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NA CIL_0001NA_0002 CGP 4:97772734-98383306
CIL_0008LM CIL_0008LM_0002 VISTA 4:97807609-98410094
CIL_00085K CIL_00085K_0002 VISTA 4:97921540-98524627
CIL_00094S CIL_00094S_0002 VISTA 4:97942382-98545050
CIL_0002G1 CIL_0002G1_0002 CGP 4:98355370-98719603

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294613 TM2D1-201 protein_coding Homo_sapiens 0 302
ENST00000371178 TM2D1-008 retained_intron Homo_sapiens 1e-22 111
ENST00000371180 TM2D1-001 protein_coding Homo_sapiens 0 302
ENST00000468586 TM2D1-005 nonsense_mediated_decay Homo_sapiens 7e-23 111
ENST00000472357 TM2D1-010 retained_intron Homo_sapiens 0 195
ENST00000472989 TM2D1-011 processed_transcript Homo_sapiens 0 261
ENST00000488206 TM2D1-003 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000488410 TM2D1-006 processed_transcript Homo_sapiens 3e-35 152
ENST00000494926 TM2D1-004 nonsense_mediated_decay Homo_sapiens 6e-23 111
ENST00000496465 TM2D1-002 nonsense_mediated_decay Homo_sapiens 2e-22 110
ENST00000606498 TM2D1-012 protein_coding Homo_sapiens 0 302

Loading