C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272193 SOX13-004 ENSG00000143842 9606 + 1:204116065-204126152 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyMuscleTestisENST00000272193
Transcript ID Kidney Muscle Testis
ENST00000272193 0.791±0.00 0.499±0.00 1.773±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984
CIL_0000TU CIL_0000TU_0002 CGP 1:203861603-204127743
CIL_00057L CIL_00057L_0002 CGP 1:204073115-204152003

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153799 Sox13-002 protein_coding Mus_musculus 0 1825
ENSMUST00000094551 Sox13-201 protein_coding Mus_musculus 0 1816
ENSMUST00000144386 Sox13-001 protein_coding Mus_musculus 0 1483
ENSMUST00000126530 Sox13-003 retained_intron Mus_musculus 0 643
ENSMUST00000145922 Sox13-004 retained_intron Mus_musculus 0 327
ENSDART00000019047 AL929022.1-201 protein_coding Danio_rerio 0 263
ENSDART00000044224 sox7-201 protein_coding Danio_rerio 0.00000000002 75
ENSDART00000152827 sox7-202 protein_coding Danio_rerio 0.00000000002 75
ENSDART00000130271 sox7-001 protein_coding Danio_rerio 0.00000000002 75
ENSMUST00000040019 Sox10-201 protein_coding Mus_musculus 0.00000001 66
ENSMUST00000054491 Sox18-001 protein_coding Mus_musculus 0.00000005 64
ENSMUST00000099151 Sox2-001 protein_coding Mus_musculus 0.00003 55

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