C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SRY (sex determining region Y)-box 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000525258 SOX13-009 ENSG00000143842 9606 + 1:204122386-204123729 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984
CIL_0000TU CIL_0000TU_0002 CGP 1:203861603-204127743
CIL_00057L CIL_00057L_0002 CGP 1:204073115-204152003

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126530 Sox13-003 retained_intron Mus_musculus 0 385
ENSMUST00000094551 Sox13-201 protein_coding Mus_musculus 0 374
ENSMUST00000153799 Sox13-002 protein_coding Mus_musculus 0 374
ENSMUST00000144386 Sox13-001 protein_coding Mus_musculus 0 374
ENSMUST00000040019 Sox10-201 protein_coding Mus_musculus 0.000001 58
ENSMUST00000099151 Sox2-001 protein_coding Mus_musculus 0.00005 53

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