C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367204 SOX13-002 ENSG00000143842 9606 + 1:204073604-204127743 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367204
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367204 8.499±0.00 7.616±0.00 1.994±1.74 2.088±1.65 4.690±3.48 6.372±0.00 3.407±1.68 5.310±0.00 3.396±0.00 8.798±0.00 8.128±1.03 5.771±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984
CIL_0000TU CIL_0000TU_0002 CGP 1:203861603-204127743
CIL_00057L CIL_00057L_0002 CGP 1:204073115-204152003

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009653 TAS anatomical structure morphogenesis
GO:0043565 ISS sequence-specific DNA binding
GO:0045586 IEA regulation of gamma-delta T cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153799 Sox13-002 protein_coding Mus_musculus 0 2228
ENSMUST00000094551 Sox13-201 protein_coding Mus_musculus 0 2085
ENSMUST00000144386 Sox13-001 protein_coding Mus_musculus 0 1718
ENSMUST00000126530 Sox13-003 retained_intron Mus_musculus 0 643
ENSMUST00000145922 Sox13-004 retained_intron Mus_musculus 0 327
ENSDART00000019047 AL929022.1-201 protein_coding Danio_rerio 0 263
ENSDART00000044224 sox7-201 protein_coding Danio_rerio 0.00000000005 75
ENSDART00000152827 sox7-202 protein_coding Danio_rerio 0.00000000005 75
ENSDART00000130271 sox7-001 protein_coding Danio_rerio 0.00000000005 75
ENSMUST00000040019 Sox10-201 protein_coding Mus_musculus 0.00000003 66
ENSMUST00000054491 Sox18-001 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000099151 Sox2-001 protein_coding Mus_musculus 0.00007 55

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