C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144471 Hdac3-004 ENSMUSG00000024454 10090 - 18:37936972-37944075 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENSMUST00000144471
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000144471 10.590±1.44 6.859±0.92 7.079±3.75 10.017±2.22 6.113±0.25 3.666±0.40 4.039±0.18 4.971±0.69 4.062±0.00 9.393±3.28 4.560±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QD CIL_0006QD_0002 CGP 18:37843601-37954988
CIL_0006QE CIL_0006QE_0002 CGP 18:37935844-37959179

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305264 HDAC3-001 protein_coding Homo_sapiens 0 507
ENST00000459727 HDAC3-012 processed_transcript Homo_sapiens 0 435
ENST00000467533 HDAC3-005 retained_intron Homo_sapiens 2e-22 110
ENST00000469207 HDAC3-013 processed_transcript Homo_sapiens 0 370
ENST00000469550 HDAC3-014 retained_intron Homo_sapiens 0 507
ENST00000475549 HDAC3-010 retained_intron Homo_sapiens 1.4013e-45 185
ENST00000486618 HDAC3-009 retained_intron Homo_sapiens 0 353
ENST00000491581 HDAC3-011 retained_intron Homo_sapiens 0 355
ENST00000492407 HDAC3-007 retained_intron Homo_sapiens 0 545

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