C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144759 Usp16-004 ENSMUSG00000025616 10090 + 16:87455058-87483310 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastLungMuscleTestisENSMUST00000144759
Transcript ID Adipose Breast Lung Muscle Testis
ENSMUST00000144759 4.581±0.29 5.496±1.56 5.361±0.87 4.983±0.00 12.816±2.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CH CIL_0003CH_0002 CGP 16:87433407-87483517
CIL_000313 CIL_000313_0002 CGP 16:87454703-87495873

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0008270 IEA zinc ion binding
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334352 USP16-003 protein_coding Homo_sapiens 0 1360
ENST00000399973 USP16-006 protein_coding Homo_sapiens 0 370
ENST00000399975 USP16-001 protein_coding Homo_sapiens 0 1360
ENST00000399976 USP16-002 protein_coding Homo_sapiens 0 1360
ENST00000474835 USP16-004 retained_intron Homo_sapiens 0 1182
ENST00000485067 USP16-005 retained_intron Homo_sapiens 0 425

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