C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterol regulatory element binding transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144942 Srebf1-007 ENSMUSG00000020538 10090 - 11:60200463-60210465 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLiverMuscleOvaryTestisENSMUST00000144942
Transcript ID Adipose Adrenal Breast Heart Kidney Liver Muscle Ovary Testis
ENSMUST00000144942 39.633±0.73 32.456±0.00 75.433±0.00 4.276±0.00 6.179±0.18 18.557±7.94 6.545±1.26 9.707±0.00 1.657±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_0000NM CIL_0000NM_0002 CGP 11:59970614-60199197
CIL_00003U CIL_00003U_0003 CGP 11:60105013-60222581
CIL_00003N CIL_00003N_0003 CGP 11:60199089-60352905

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261646 SREBF1-002 protein_coding Homo_sapiens 0 2307
ENST00000355815 SREBF1-003 protein_coding Homo_sapiens 0 2359
ENST00000395751 SREBF1-018 nonsense_mediated_decay Homo_sapiens 0 1456
ENST00000395756 SREBF1-005 nonsense_mediated_decay Homo_sapiens 0 1456
ENST00000395757 SREBF1-004 protein_coding Homo_sapiens 0 2115
ENST00000469356 SREBF1-010 retained_intron Homo_sapiens 0 394
ENST00000470247 SREBF1-007 retained_intron Homo_sapiens 0 359
ENST00000471445 SREBF1-011 retained_intron Homo_sapiens 0 442
ENST00000478616 SREBF1-015 protein_coding Homo_sapiens 0 327
ENST00000486311 SREBF1-014 protein_coding Homo_sapiens 0 268
ENST00000580540 SREBF1-019 retained_intron Homo_sapiens 0 215

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