C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterol regulatory element binding transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395756 SREBF1-005 ENSG00000072310 9606 - 17:17812073-17818327 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLiverMuscleOvaryPlacentaTestisENST00000395756
Transcript ID Adrenal Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000395756 10.074±0.00 3.339±0.00 5.032±0.00 19.359±0.00 3.909±0.00 9.864±0.00 5.233±0.64 16.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0001 VISTA 17:17235872-17840873
CIL_0000NM CIL_0000NM_0001 CGP 17:17505563-17811453
CIL_00003U CIL_00003U_0002 CGP 17:17681473-17837002
CIL_00003N CIL_00003N_0002 CGP 17:17810399-17972422

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020846 Srebf1-005 protein_coding Mus_musculus 0 1731
ENSMUST00000134660 Srebf1-006 protein_coding Mus_musculus 0 1731
ENSMUST00000144942 Srebf1-007 protein_coding Mus_musculus 0 1456
ENSMUST00000149238 Srebf1-001 processed_transcript Mus_musculus 0 534
ENSMUST00000156304 Srebf1-004 processed_transcript Mus_musculus 0 409
ENSMUST00000154925 Srebf1-002 processed_transcript Mus_musculus 0 309
ENSMUST00000136426 Srebf1-003 processed_transcript Mus_musculus 0 224
ENSMUST00000154620 Srebf1-010 processed_transcript Mus_musculus 0.0000000005 71

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